Reconstructed natural versus potential natural vegetation in vegetation mapping - a discussion of concepts

Reconstruction mapping of the natural (primary) vegetation of intensively cultivated land is based on: (1) classification of actually existing remains of natural or near-natural plant communities as mapping units; (2) delimitation of their habitat types; (3) detection of correlations between vegetation units and habitat types. Natural plant communities thus serve as indicators of abiotic habitat conditions. Reconstruction mapping is based on the extrapolation of the potential distribution of individual vegetation units to sites of similar habitat types where the natural vegetation does not exist any more. The same procedure is used for mapping the potential natural vegetation. Both types of natural vegetation maps are identical on sites where the abiotic natural habitat conditions (relief, geological substratum, climate, water regime, soils) remain practically unchanged. On sites where the natural habitat conditions have been considerably changed by man, e.g. in areas with superficial coal mining (complete destruction of the landscape, removal of soil cover, creation of large slag heaps) or in towns, no natural (primary) vegetation exists. This causes difficulties in the hypothetical concept of the potential natural vegetation and its definition. In contrast, in such sites reconstruction vegetation mapping uses the extrapolation of mapping units of the primary vegetation to the original natural habitat conditions.     

Proteasome-dependent degradation of replisome components regulates faithful DNA replication

The replication machinery, or the replisome, collides with a variety of obstacles during the normal process of DNA replication. In addition to damaged template DNA, numerous chromosome regions are considered to be difficult to replicate owing to the presence of DNA secondary structures and DNA-binding proteins. Under these conditions, the replication fork stalls, generating replication stress. Stalled forks are prone to collapse, posing serious threats to genomic integrity. It is generally thought that the replication checkpoint functions to stabilize the replisome and replication fork structure upon replication stress. This is important in order to allow DNA replication to resume once the problem is solved. However, our recent studies demonstrated that some replisome components undergo proteasome-dependent degradation during DNA replication in the fission yeast Schizosaccharomyces pombe. Our investigation has revealed the involvement of the SCF^Pof3 (Skp1-Cullin/Cdc53-F-box) ubiquitin ligase in replisome regulation. We also demonstrated that forced accumulation of the replisome components leads to abnormal DNA replication upon replication stress. Here we review these findings and present additional data indicating the importance of replisome degradation for DNA replication. Our studies suggest that cells activate an alternative pathway to degrade replisome components in order to preserve genomic integrity.     

Interaction of Ddc1 and RPA with single-stranded/double-stranded DNA junctions in yeast whole cell extracts: Proteolytic degradation of the large subunit of replication protein A in ddc1Δ strains

To characterize proteins that interact with single-stranded/double-stranded (ss/ds) DNA junctions in whole cell free extracts of Saccharomyces cerevisiae, we used [³²P]-labeled photoreactive partial DNA duplexes containing a 3′-ss/ds-junction (3′-junction) or a 5′-ss/ds-junction (5′-junction). Identification of labeled proteins was achieved by MALDI-TOF mass spectrometry peptide mass fingerprinting and genetic analysis. In wild-type extract, one of the components of the Ddc1-Rad17-Mec3 complex, Ddc1, was found to be preferentially photocrosslinked at a 3′-junction. On the other hand, RPAp70, the large subunit of the replication protein A (RPA), was the predominant crosslinking product at a 5′-junction. Interestingly, ddc1Δ extracts did not display photocrosslinking of RPAp70 at a 5′-junction. The results show that RPAp70 crosslinked to DNA with a 5′-junction is subject to limited proteolysis in ddc1Δ extracts, whereas it is stable in WT, rad17Δ, mec3Δ and mec1Δ extracts. The degradation of the RPAp70-DNA adduct in ddc1Δ extract is strongly reduced in the presence of the proteasome inhibitor MG 132. We also addressed the question of the stability of free RPA, using anti-RPA antibodies. The results show that RPAp70 is also subject to proteolysis without photocrosslinking to DNA upon incubation in ddc1Δ extract. The data point to a novel property of Ddc1, modulating the turnover of DNA binding proteins such as RPAp70 by the proteasome.     

A survey for the Critically Endangered Liben Lark Heteromirafra archeri in Somaliland,north-western Somalia

The Critically Endangered Archer's Lark (now Liben Lark) Heteromirafra archeri was formerly considered to be endemic to north-western Somalia and known only from the Tog Wajaale Plain, where 18 specimens were collected between 1918 and 1922. Fifteen visits between 1970 and 2008 failed to relocate the species there, although popula- tions are now known from adjacent Ethiopia. We conducted three days of intensive surveys on the Tog Wajaale Plain in May 2010. Despite the three other lark species present being in full display, and H. archeri being recorded to have bred in early June, no Liben Larks were found. Vegetation structure surveys indicated that the plain has a taller and denser growth of grass than either of the other known localities for Liben Lark (the Liben and Jijiga Plains) making Tog Wajaale Plain seem superficially more suitable for the species, which prefers areas of taller grass elsewhere. However, previous large-scale agricultural activities may have altered the composition of grass species and precipitated the observed invasion of exotic weeds, notably Parthenium hysterophorus. Importantly, the Tog Wajaale Plain has a greater density of bushes than either the Liben or Jijiga Plains, possibly making ground-nesting birds more susceptible to predation by perch hunters.     

Long-term exclosure of sheep-grazing from an ancient wood: Vegetation change after a sixty-year experiment

Question: An ancient woodland site with a long history of coppicing and heavy grazing was protected from domesticated stock in 1955. Results of a vegetation-monitoring experiment were subsequently published in 1983. This study followed up the original research to investigate whether observed trends were as predicted. These included a shift in tree species composition in favour of shade-tolerant species, beech (Fagus sylvatica) and rowan (Sorbus aucuparia), at the expense of light-demanding birch (Betula spp.) and oak (Quercus petraea agg.), and progress towards a typical woodland ground flora. Location: Peak District National Park, United Kingdom. Methods: The mixed oak–birch woodland was re-surveyed in 2011. Two enclosures (1955 and 1980s) and an unenclosed control area were investigated. Overstorey structure and composition was assessed by measuring canopy openness and the girths of all trees and saplings. Herb layer species composition was also recorded in 28 vegetation plots. Results: We demonstrated a progressive decline in the number of mature oaks and birch in the old enclosure although they still regenerated successfully. Only a few individuals of beech and rowan appeared. Herb layer species composition differed between the subareas but since the 1980s, the temporal change in the old enclosure was negligible. The new enclosure followed a similar pattern in both canopy and herb layer as observed in the early years in the old enclosure. However, the control subarea had no regeneration of woody species and limited ground flora. Conclusions: After nearly 60 years, the replacement of light-demanding dominants by shade-tolerant trees was still limited, probably by low pH and stable light conditions. The findings are pertinent to the impacts of large herbivore grazing (domestic stock or wild) on woodland dynamics.     

城市公园春季声景观与植被结构的关系

城市公园是城市生态系统的重要组成部分和城市生物多样性热点地区，具有丰富的声景观资源。由于声景观及声学方法具有信息量大，成本低，低侵入的特点，因此其研究和应用对生态系统健康及监测具有较高价值。声景观研究通过总结生物声的活动或多样性来衡量生物多样性。记录了北京20个城市公园的春季声景观，使用定量方法描述了声景观特征与变化；测试三种了已被证明与生物多样性相关并被广泛使用的声学指数（BIO、ADI、NDSI）与植被群落关系，完成了城市环境中声景观与环境关系的初步探究。研究结果表明：（1）声学指数能够有效表征城市公园声景观信息，具有显著的时间动态特性，能准确反映鸟类黎明合唱等重要生物生态活动；（2）声学强度指数也具有显著的时间动态变化和沿频率梯度的变化，不同的频率区间反映了不同声学群落的活动信息；（3）植被结构尤其是垂直结构对声景观起着重要作用，垂直异质性越大，声学多样性越高。发现支持声景观作为公园植被状况的度量，强调了其作为生物多样性和生态系统健康状况监测方法，用于城市管理和可持续发展的巨大潜力。